CDS

Accession Number TCMCG007C17355
gbkey CDS
Protein Id XP_009131432.1
Location complement(join(2844092..2844235,2844355..2844466,2844609..2844775,2844883..2845035,2845118..2845256,2845352..2845452,2845565..2846172,2846261..2846908,2847066..2847320,2847431..2847558,2847635..2847789,2847864..2848069,2848162..2848197,2848272..2848347,2848424..2848560,2848836..2849118,2849205..2849372,2849463..2849561,2849657..2849843,2849937..2850098,2850252..2850328))
Gene LOC103856106
GeneID 103856106
Organism Brassica rapa

Protein

Length 1346aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_009133184.3
Definition paired amphipathic helix protein Sin3-like 2 isoform X1 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category B
Description Paired amphipathic helix protein Sin3-like
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
KEGG_ko ko:K11644        [VIEW IN KEGG]
EC -
KEGG_Pathway ko04139        [VIEW IN KEGG]
ko04919        [VIEW IN KEGG]
ko05016        [VIEW IN KEGG]
ko05202        [VIEW IN KEGG]
map04139        [VIEW IN KEGG]
map04919        [VIEW IN KEGG]
map05016        [VIEW IN KEGG]
map05202        [VIEW IN KEGG]
GOs GO:0000118        [VIEW IN EMBL-EBI]
GO:0000122        [VIEW IN EMBL-EBI]
GO:0000785        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005694        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0006325        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006357        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006476        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010558        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016569        [VIEW IN EMBL-EBI]
GO:0016570        [VIEW IN EMBL-EBI]
GO:0016575        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0035601        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044427        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045892        [VIEW IN EMBL-EBI]
GO:0045934        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051253        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0098732        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1902679        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903507        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000113        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGAAGCGGATTAGAGATGACGTGTACTCCTCCGGGTCTCAATTCAAACGTCCTTTGCCCTCTTCTCGTGGCGAATCATATGTGCAATCTCCAGTCCCTGGTGATGAGGGAGTGAACTCTCAGAAGTTGACAACGGATGATGCTTTGTCCTACTTGAAGGATGTCAAGGAGATGTTTCAAGATCAACGGGACAAGTATGATATGTTTCTTGAGGTTATGAAAGACTTTAAAGCACAAAGGACGGATACATCTGGTGTGATTGCACGAGTCAAGGAGTTGTTTAAAGGCCATAACAATTTGATTTTCGGGTTTAACACGTTTCTGCCTAAGGGGTTTGAAATAACGCTTGATGAAGTAGAAGAAGAAACTCCACCTAAGAAAACTGTTGAATTTGAAGAGGCTATATCTTTTGTTAATAAAATTAAGAAACGGTTCCAGAGCGATGAAGGTGTCTATAAGTCTTTCTTGGAGATCTTAAATATGTATCGGAAGGATGATAAGGACATCACTGAGGTTTACAATGAGGTATCGGCTCTTTTTGAGGACCACCTGGATTTGCTTGAAGAGTTTACTAGGTTTCTGCCAGAGTCTTTGGCGGCTCATTCAGCAGCTCAGTTAATCCGGAGTCAGGCCCAACGGTATCATGACCGAGGATCAGGTCCTCCTCTTGTGCGTCGAATGTTAATGGAGAAGGATCGCCGACGAGAAAGGGCTGTTGCTTCTCGGGGTGACCGTGATCATAGTGTTGACCGTTCTGACCATAATGATGATAAAGCAATGGTTAAGATGCACAGAGAGCCGAAGAAACGAGTCGATAAGGAGAATAGAGAAAGGAGAAGCCGTGATTTGGACGATGGAGAAGCAGAGCAAGATAACTTGCACCATTTCTCAGAGAAAAGGAAGTCATCCAGAAGAACTGAGGGCTTTGAAGCTTATTCCGGTCCTGCTTCACATTCTGAGAAAAACAATCTAAAAAGCATGTACAACCAAGCATTTGTGTTTTGTGAGAAAGTCAAGGAGAGACTATGCAGCCAAGATGATTATCAGACATTCTTGAAGTGTCTCAATATTTTCAGCAATGGAATTATCCACAGGAAAGAGCTGCAGAATTTGGTTTCTGATCTGCTTGGAAAATTCCCTGATCTCATGGATGAGTTTAATCAGTTCTTTGAGCGTTGTGAGAGTAATGATGGTTTCCAGCACCTCGCTGGCGTTATGAGCAAAAAATCACTAAGCAGTGAAGAACATTTATCAAGGCCAGTGAAGGGGGAGGAAAAGGAAACGGAAACGGAAAGAGAACACAAACGCGACCTTGATGCTGCTAAGGAAAAGGAGCGTTCCAACGACAAGTACATGGGGAAATCTATTCAAGAGCTTGATCTATCTGATTGCGAGCGGTGCACTCCTAGCTACCGACTCCTCCCATCGGATTATCCAATACCTTCCGTCCGCCACAGACAGAAATTAGGGGCTGCTGTTTTAAATGATCACTGGGTTTCTGTCACTTCAGGAAGTGAAGACTACTCTTTTAAGCACATGCGCAGAAACCAATATGAAGAAAGTTTGTTTAGATGTGAAGATGACAGATTTGAGTTGGATATGCTGTTGGAATCTGTGGGTTCTGCTGCGAAAAGCGCAGAAGAGTTGTTGAATAATATAGTTGAGAAGAAAATAAGTATAGAGGGCTCCTTCCGGGTTGAAGACCACTTCACAGCCCTAAATTTAAGGTGCATAGAGAGACTCTATGGCGACCATGGTCTTGACGTGACAGACCTAATACGTAAGAATCCAGCCGCTGCACTTCCTGTAATTCTTACTCGTTTGAAGCAGAAACAAGAAGAATGGACAAAGTGCCGTGAAGATTTTAATGCGGTCTGGGCGGATGTATATGCGAAGAATCATTACAAGTCACTTGATCACCGCAGCTTCTATTTTAAGCAGCAAGATTCTAAGAACTTGAGTGCCAAAGCGCTGGTGACTGAAATCAAGGACCTGAAAGAGAAGTCTCAGGAAGAAGATGATGTTCTTCTGTCTGTAGCTGCTGGTCACAGACAACCCATAATTTCTCACTTTGAGTATGAATATTTGGACAAGACTATTCATGAAGATTTATTCAAACTAGTCCAGTTTTCATGTGAGGAGATATGTTCAACAAAGGAGCAGATCGGTAAAGTTTTGAGGCTCTGGAAAAGTTTTCTGGAGATGATGCTTGGTGTTCCTCCCAGGGCCAAGGGGTCAAATTCTGTTGAAGATGCAGTAGAAACCAAGCATCACGGTGCATTGACGAGTGGGGATGTTAATGTGAGCTCTGACTCGGCAAATTTGGTTTCGAGGCAACTAAAGTTTGCTGCCAATGGAGATGACTATGCTTCATCTGGGGCCTCCAAACATGGCGCGATTGGTCTGTTAAAGAGGGATTCTTCAGCGAAAGAAAATTGCAAGGATGGTGATCCTGCTAATAAAGATGGTGCCACCTGTTCTACTGTAAAACCTCAGAAAGATCAAGAAAATGGAAATGGAGCCGATAAACGATCTGGAGATGTTGATGATAGAGTAGCCACATTCCTAAGTGGGGTAGAAAACAACAATGGTAAAGTAGGGAGTGGAGATTCGTCAGGTTCACGTGGCATTTTATCCAAATCAGGTGACGCTATAGAGAACACTGACACCATTGTTATCGCAAATGGAGTGCTGCCAGATGCTTCTAAAGCCAACAGTAATTATGATGAACCTGGTGGTCCACCCAATATTGAGAAGGAGGAAGGTGAATTGTCACCTACTGGTGATTCTGAAGACAACTTTGTTGTTTATGAAGATCGTGGCTTGAAGTCTACTGCCAAGCCAGAACATTCCGTTGAAGCTGAAGGAGAAAATGATGATGATGCTGACGATGAAGATGGCGATGATGCTTCAGAAGGTGGTGAGGACGCGTCGGGAACTGAATCTATTGGTGACGAATGTTCACAAGACGGTAACGGTATGGAGGAAGAGGGCGAGCATGATGAGATTGATGGTAAAGCTGAGAGTGAAGGAGAGGCAGAGGGGATGGATTCGCATCTTATAGAAGAAAACAATCGGCTGCTTCCGTTGTCAGAACGTGTTCTGTTATCCGTTAAGCCTCTTTCAAAGCATGTAGCTGCAGCAGCGTTGCTTGATGAGAGACAAAAAGATTCCAGAGTGTTCTACGGGAATGACGACTTTTATGTTCTTTTCAGGCTTCATCGAGTCCTGTACGAGAGAATTTTGTCTGCAAAAACATATTGCACAGGCAGTGAACTGAATCGGAGAAACACGAAAGATACTAGTTCACCAGATCCTTATGCAAGGTTTATGAGTGCTTTGTTTAGTCTGCTTAATGGCTCAGCTGAAAGTTCCAAGTTTGAGGATGAATGTCGAGCTATTATTGGAAACCAATCATATGTTTTATTCACGTTGGAAAAACTGATATACAAATTGGTTAAACAGCTTCAAGCTGTTGTAGCGGACGATATGGATAATAAGCTTCTTCAGCTGTACGAGTATGAGAAATCTCGGAAACCTAGGAGGGTCATTGACTCGGTGTATTATGAAAACGCGAGGATTCTCCTTCACGAGGAAAATATTTATCGGTTGGAATGTTCGTCCTCTCCATCCCGTTTGTCAATCCAGCTTATGGATAGTATAATCGAAAAGCCAGAGGCTTATGCAGTTTCCATGGATCCCACGTTTGCAAGTTATCTGCAAAAGGAGTTCCTTTCCAACTCATCAGGGAAAAAAGTAGTCCCACAGGCCATTGTGTTAAAAAGGAACATGCGTGGATACTCTGGTCTGGATGATCTTGCAGTAGCCTGCAAAGCAATGGAAGGAGTAGAAGTAATTAATGGCCTTGAATGCAAGATGTCTTGCTCTTCCTACAAGATCTCGTATGTTTTGGACACGGAGGATTTCTTCCATAGGAAGAAGAAGAAGCAGAAGAAGCCATCACATGAAAAATCATCATCGGAGCAACGCAAGTTGTACAGAGTAGAAAGATTCCACAAGTTTCTCTCAGCTTCAAGATGA
Protein:  
MKRIRDDVYSSGSQFKRPLPSSRGESYVQSPVPGDEGVNSQKLTTDDALSYLKDVKEMFQDQRDKYDMFLEVMKDFKAQRTDTSGVIARVKELFKGHNNLIFGFNTFLPKGFEITLDEVEEETPPKKTVEFEEAISFVNKIKKRFQSDEGVYKSFLEILNMYRKDDKDITEVYNEVSALFEDHLDLLEEFTRFLPESLAAHSAAQLIRSQAQRYHDRGSGPPLVRRMLMEKDRRRERAVASRGDRDHSVDRSDHNDDKAMVKMHREPKKRVDKENRERRSRDLDDGEAEQDNLHHFSEKRKSSRRTEGFEAYSGPASHSEKNNLKSMYNQAFVFCEKVKERLCSQDDYQTFLKCLNIFSNGIIHRKELQNLVSDLLGKFPDLMDEFNQFFERCESNDGFQHLAGVMSKKSLSSEEHLSRPVKGEEKETETEREHKRDLDAAKEKERSNDKYMGKSIQELDLSDCERCTPSYRLLPSDYPIPSVRHRQKLGAAVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVGSAAKSAEELLNNIVEKKISIEGSFRVEDHFTALNLRCIERLYGDHGLDVTDLIRKNPAAALPVILTRLKQKQEEWTKCREDFNAVWADVYAKNHYKSLDHRSFYFKQQDSKNLSAKALVTEIKDLKEKSQEEDDVLLSVAAGHRQPIISHFEYEYLDKTIHEDLFKLVQFSCEEICSTKEQIGKVLRLWKSFLEMMLGVPPRAKGSNSVEDAVETKHHGALTSGDVNVSSDSANLVSRQLKFAANGDDYASSGASKHGAIGLLKRDSSAKENCKDGDPANKDGATCSTVKPQKDQENGNGADKRSGDVDDRVATFLSGVENNNGKVGSGDSSGSRGILSKSGDAIENTDTIVIANGVLPDASKANSNYDEPGGPPNIEKEEGELSPTGDSEDNFVVYEDRGLKSTAKPEHSVEAEGENDDDADDEDGDDASEGGEDASGTESIGDECSQDGNGMEEEGEHDEIDGKAESEGEAEGMDSHLIEENNRLLPLSERVLLSVKPLSKHVAAAALLDERQKDSRVFYGNDDFYVLFRLHRVLYERILSAKTYCTGSELNRRNTKDTSSPDPYARFMSALFSLLNGSAESSKFEDECRAIIGNQSYVLFTLEKLIYKLVKQLQAVVADDMDNKLLQLYEYEKSRKPRRVIDSVYYENARILLHEENIYRLECSSSPSRLSIQLMDSIIEKPEAYAVSMDPTFASYLQKEFLSNSSGKKVVPQAIVLKRNMRGYSGLDDLAVACKAMEGVEVINGLECKMSCSSYKISYVLDTEDFFHRKKKKQKKPSHEKSSSEQRKLYRVERFHKFLSASR